D data types breast TCGA_PRAD_list <- readRDS("data/appendix/TCGA_p_list.rds")

plot_B <- eulerr::venn(TCGA_PRAD_list) %>% plot

plot_grid(plot_A, plot_B, ncol = 2, labels = "AUTO")

``` (ref:TCGA-bp-caption) Available omics for TCGA Breast and Prostate cancer. (A) Number of patients for each omics type and their combinations, depicted as a Venn diagram, in TCGA BRCA (Breast Invasive Carcinoma) study. (B) Same for the TCGA PRAD (Prostate Adenocarcinoma) study.

D.0.1 TCGA: Prostate cancer

Similarly, for prostate cancer, reference can be made to data from the TCGA study (Abeshouse et al. 2015), which has the same type of data but for a smaller number of patients than the breast cancer (Figure ??B).

References

Abeshouse, Adam, Jaeil Ahn, Rehan Akbani, Adrian Ally, Samirkumar Amin, Christopher D Andry, Matti Annala, et al. 2015. “The Molecular Taxonomy of Primary Prostate Cancer.” Cell 163 (4). Elsevier: 1011–25.